Nextstrain is an open-source project that tracks the genetic evolution of pathogens in near real time. It processes publicly shared genome sequences into regularly updated phylogenetic analyses and visualisations for viruses including SARS-CoV-2, seasonal influenza, mpox and RSV, and publishes its analysis tools, including Nextclade, as free software.
Much of its input data comes from GISAID, whose terms restrict redistribution; only data shared openly, for example through NCBI, can be reused freely.
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